RnoEX0041502 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95823215-95834450:+
Coord C1 exon
chr10:95823215-95823322
Coord A exon
chr10:95824496-95824793
Coord C2 exon
chr10:95834183-95834450
Length
298 bp
Sequences
Splice sites
3' ss Seq
TTATTTTAACTTCCTTGTAGCCT
3' ss Score
7.8
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
CTTAGCGAATGCCTAGAGGGAGTCCAGGTGGAGCACAGCCCTGACCTGTCAGTCACCGTCAACACCAAAAAGTCCCACCAGACATGGACCTTTGCTCTGACCTGTAAG
Seq A exon
CCTGCAAGAATGCTGTGTCGGGTAGCCTTGCTCTATGATGCTCATCGTCCTCATTTTAGTATCATTGCCATATCTGCCGGAGATAGTACTGCCCAGGTATCACAAGAAGTCCCCGAGAACTGTCAAGAATGGATAGGAGGAGAGATGGCCCAAAATGGATTAGATCATTACGTGTATAAAGTCGGGATAGCATTTAACACAGAAATATTTGGAACTTTTCGCCAAACCATAGTTTTCGACTTTGGATTGGAGCCAGTACTCATGCAAAGAGTAATGATTGACGCAGCTTCTACAGAAG
Seq C2 exon
ATCTTGAGTACCTGATGCATGCCAAGCAGCAGCTGGTAACCACAGCCAGGCGCTGGGAGCCTTCCTCCAAGACTATTGTAGACTTTGAACCTAACGAGACTACTGATTGGGAGAAGAGCCTTTTGATCAGATACCAAATTCCTCTCTCTGCTGACCAGCTGTTTACACAGTCCGTTTTAGACAAATCCTTGACCAAGACTAACTATCAGTCACGGCTACACGACCTGCTTTATATTGAGGAGATAGCCCAGTATAAAGAAGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTCAGTCACCGTCAAC
R:
ATAAAGCAGGTCGTGTAGCCG
Band lengths:
299-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]