GgaEX6016312 @ galGal3
Exon Skipping
Gene
ENSGALG00000003957 | APOH
Description
NA
Coordinates
chr18:7454794-7456831:+
Coord C1 exon
chr18:7454794-7454970
Coord A exon
chr18:7455304-7455400
Coord C2 exon
chr18:7456755-7456831
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCTTAAACTTTGATTAACAGCAA
3' ss Score
5.19
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TCTGTCCCAGGCCACCAGAAGTGCTGTTTGCCACAATCAATGTGGTCAAAAATGAGTATAACGTGGGTGAGGAAATCGAATACACCTGCAGGCCGGGGTTTGTGCCCAACAGCGGCCAGAGAAAGTACATCTGCCAGCCCACTGGCAGGTGGCCTCTCAACACGCTCTTATGCCTAC
Seq A exon
CAAAGAGATGTCCCGCCCCTGCCCCCTTGCAGCATGGAACAATTGATTCTAGAGATTTCCACTACCGGAGTTCTTTAAGTTTCTCATGTGACCCAGG
Seq C2 exon
TTACAGTCTCGTTGGGTCAAGGACGAGCCAATGCATGTCAGATGGCAAGTGGAGTGGAATCCCCCCCCAGTGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003957-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=95.0)
A:
PF0008415=Sushi=PU(53.7=87.9)
C2:
PF0008415=Sushi=PD(44.4=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGGGTGAGGAAATCGAA
R:
TCCACTTGCCATCTGACATGC
Band lengths:
171-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]