MmuEX6090715 @ mm9
Exon Skipping
Gene
ENSMUSG00000000049 | Apoh
Description
apolipoprotein H [Source:MGI Symbol;Acc:MGI:88058]
Coordinates
chr11:108257130-108266201:+
Coord C1 exon
chr11:108257130-108257306
Coord A exon
chr11:108258613-108258709
Coord C2 exon
chr11:108266125-108266201
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTCTTTAAATTGCAGCCA
3' ss Score
9.18
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TCTGTCCGAAGCCGGATGACCTACCATTTGCTACGGTTGTCCCCTTAAAGACATCCTACGACCCTGGGGAGCAGATTGTCTACTCCTGCAAGCCAGGCTACGTGTCCAGGGGAGGGATGAGACGGTTTACCTGTCCTCTCACAGGAATGTGGCCCATCAACACCCTGAGATGTGTCC
Seq A exon
CCAGAGTATGTCCTTTCGCTGGAATCTTAGAAAATGGAATTGTACGCTACACGAGTTTTGAATATCCCAAGAACATCAGTTTTGCTTGTAACCCTGG
Seq C2 exon
GTTTTTTCTGAATGGGACCAGCTCATCTAAGTGCACGGAGGAAGGAAAATGGAGCCCAGATATTCCTGCTTGTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000049-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(93.5=96.7),PF0008415=Sushi=PU(5.0=5.0)
A:
PF0008415=Sushi=PD(4.8=9.1),PF0008415=Sushi=FE(53.3=100)
C2:
PF0008415=Sushi=PD(40.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGGGAGCAGATTGTCTA
R:
GGCTCCATTTTCCTTCCTCCG
Band lengths:
172-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: