RnoEX6050235 @ rn6
Exon Skipping
Gene
ENSRNOG00000003566 | Apoh
Description
apolipoprotein H [Source:RGD Symbol;Acc:1310625]
Coordinates
chr10:96640473-96644324:+
Coord C1 exon
chr10:96640473-96640649
Coord A exon
chr10:96642054-96642150
Coord C2 exon
chr10:96644248-96644324
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCTTTCTCTTTCAATTGCAGCCA
3' ss Score
11.31
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCTGTCCGAAGCCGGATGAACTACCGTTTGCTGTGGTTGTTCCCTTAAAAACATTCTATGACCCAGGGGAGCAGATTGTCTATTCCTGCAAGCCAGGCTATGTGTCCAGGGGAGGGATGAGACGGTTTACCTGTCCTCTCACAGGGATGTGGCCCATCAACACCCTGAAATGTATAC
Seq A exon
CCAGAGTGTGTCCTTTTGCCGGAATCTTAGAAAATGGAGTTGTACGCTACACGACTTTTGAATATCCCAACACCATTGGCTTTGCTTGTAACCCTGG
Seq C2 exon
GTATTATCTGAACGGGACTAGCTCTTCTAAGTGCACGGAGGAAGGAAAATGGAGTCCAGAACTTCCTGTTTGTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003566-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(93.5=96.7),PF0008415=Sushi=PU(5.0=5.0)
A:
PF0008415=Sushi=PD(4.8=9.1),PF0008415=Sushi=FE(53.3=100)
C2:
PF0008415=Sushi=PD(40.0=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGGGAGCAGATTGTCTA
R:
CCATTTTCCTTCCTCCGTGCA
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]