HsaEX6024295 @ hg19
Exon Skipping
Gene
ENSG00000091583 | APOH
Description
apolipoprotein H (beta-2-glycoprotein I) [Source:HGNC Symbol;Acc:616]
Coordinates
chr17:64219816-64224314:-
Coord C1 exon
chr17:64224138-64224314
Coord A exon
chr17:64222146-64222242
Coord C2 exon
chr17:64219816-64219892
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTTATCTTTGTATCACAGCCA
3' ss Score
7.53
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCTGTCCCAAGCCAGATGATTTACCATTTTCCACAGTGGTCCCGTTAAAAACATTCTATGAGCCAGGAGAAGAGATTACGTATTCCTGCAAGCCGGGCTATGTGTCCCGAGGAGGGATGAGAAAGTTTATCTGCCCTCTCACAGGACTGTGGCCCATCAACACTCTGAAATGTACAC
Seq A exon
CCAGAGTATGTCCTTTTGCTGGAATCTTAGAAAATGGAGCCGTACGCTATACGACTTTTGAATATCCCAACACGATCAGTTTTTCTTGTAACACTGG
Seq C2 exon
GTTTTATCTGAATGGCGCTGATTCTGCCAAGTGCACTGAGGAAGGAAAATGGAGCCCGGAGCTTCCTGTCTGTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091583-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=95.0),PF0008415=Sushi=PU(5.0=5.0)
A:
PF0008415=Sushi=FE(53.3=100)
C2:
PF0008415=Sushi=PD(40.0=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTTCCACAGTGGTCCCGT
R:
GCAGAATCAGCGCCATTCAGA
Band lengths:
180-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)