GgaEX6016376 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7985103-7987307:-
Coord C1 exon
chr18:7987210-7987307
Coord A exon
chr18:7986171-7986400
Coord C2 exon
chr18:7985103-7985244
Length
230 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCCTTCCCTGGCAGCTG
3' ss Score
11.09
5' ss Seq
TTGGTACGT
5' ss Score
8.11
Exon sequences
Seq C1 exon
CCAGCTGCTCCAGCATGCGGATGAGTTGTGAGTCCATCACATACTGGACCTCAGGATTTGCGGCTCTGCAAGCATGCATTGATGCAGCCATCATACAG
Seq A exon
CTGAAGACCAACCAGTCCGTGTGGGAGCAGCTGGAGCTGACGAGGGCCATGGCGATGGAGGAGGCGGCCGTGATGGAGATCGACAATTTTCCTCGTGCCATCATTTTGATTTACCTCGTCATTGCTTTCTCACCGTTTGGGTATTATTTGGCCATTCATATTGTGGCAGAAAAGGAGAGGAAGCTGAAGGAGTTCTTAAAGATATTGGGACTTCATGATACTGCCTTTTG
Seq C2 exon
GCTTTCCTGGGTGCTGCTGTACACCAGCCTGATCTTCGTCATGTCCATCCTGATGGCTGTGATCGCCACGGCCTCCTCTCTCTTTCCCCAGAGCAGTGCCTTCGTGATATTCCTCCTTTTCTTCCTGTATGGCATCTCCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(8.2=100)
A:
PF126982=ABC2_membrane_3=FE(19.5=100)
C2:
PF126982=ABC2_membrane_3=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCGGATGAGTTGTGAG
R:
GGAGGAGATGCCATACAGGAAG
Band lengths:
229-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]