MmuEX6090905 @ mm9
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110175838-110181196:-
Coord C1 exon
chr11:110181108-110181196
Coord A exon
chr11:110179016-110179245
Coord C2 exon
chr11:110175838-110175979
Length
230 bp
Sequences
Splice sites
3' ss Seq
TTTGCACTTTGTGATTATAGCTG
3' ss Score
4.45
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
AAGGCTGTTCAAAGACATGTGATGCTGCTCAGTACTGGTCTTTGGGGTTTACAGTTCTGCAGGCATCGATAGATGCTGCCATTATACAG
Seq A exon
CTGAAGACCAATGTTTCTGTGTGGAGCGAGCTGGAGTCGACCAAAGCTGTGATCATGGGAGAGGCCGCTGTTGTGGAGATTGACACCTTCCCGCGAGGGGTCATCCTCATCTACCTCGTCATAGCCTTCTCGCCCTTCGGCTACTTCCTGGCAATCCACATCGTGGCAGAAAAAGAAAAGAAGTTAAAGGAATTTTTAAAGATAATGGGACTTCATGACACTGCTTTTTG
Seq C2 exon
GCTTTCCTGGGTTCTTCTGTACGCAAGCTTGATTTTCCTTATGTCCCTGCTTATGGCTGTCATCGCAACAGCTTCTTCGTTATTCCCTCAGAGTAGCAGCATTGTGATCTTTCTACTGTTCTTCTTATATGGATTGTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.5=100)
A:
PF126982=ABC2_membrane_3=FE(19.6=100)
C2:
PF126982=ABC2_membrane_3=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGTTCAAAGACATGTGA
R:
GAAGAACAGTAGAAAGATCACAATGC
Band lengths:
212-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: