RnoEX0004899 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98621842-98627115:-
Coord C1 exon
chr10:98627027-98627115
Coord A exon
chr10:98624366-98624595
Coord C2 exon
chr10:98621842-98621983
Length
230 bp
Sequences
Splice sites
3' ss Seq
TTTGCCCCTTTTAATTATAGTTG
3' ss Score
7.21
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
CAGGCTGTTCAAAGTCATGTGATGCTGCTCAGTACTGGTCTTCAGGGTTTACAGCTTTACAGGCCTCAATAGATGCTGCCATTATACAG
Seq A exon
TTGAAGACCAATGTTTCTCTGTGGAGGGAGCTGGAGTCAACCAAAGCTGTCATCATGGGGGAAGCTGCGGTCGTGGAGATTGACACCTTCCCACGAGGGGTCATCCTCATCTACCTCGTCATAGCCTTCTCGCCCTTCGGGTACTTTCTGGCAATTCACATTGTAGCAGAAAAGGAAAAGAGGTTAAAGGAGTTTTTAAAGATAATGGGACTTCACGACACTGCTTTTTG
Seq C2 exon
GCTGTCCTGGGTTCTTCTGTACACGAGTTTGATCTTCCTTATGTCCCTTCTTATGGCCGTCATTGCAACAGCGTCCTCGTTATTCCCTCAGAGTAGCAGCATCGTGATTTTTCTGCTCTTCTTCCTGTACGGATTGTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'6-11,'6-8,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.5=100)
A:
PF126982=ABC2_membrane_3=FE(19.6=100)
C2:
PF126982=ABC2_membrane_3=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGTTCAAAGTCATGTGA
R:
CCGTACAGGAAGAAGAGCAGA
Band lengths:
221-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]