GgaEX6017105 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:4189451-4190687:+
Coord C1 exon
chr19:4189451-4189748
Coord A exon
chr19:4189906-4189988
Coord C2 exon
chr19:4190373-4190687
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAATCGATGCCATCTCTCAGTCC
3' ss Score
2.29
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTGCGCCTGGCCAACGGGCCCAGCCGGTGCCAGGGCCGCGTGGAGATCCTCTACAACGGATCCTGGGGCACGGTGTGCGACGACGACTGGGACATCGTAGACGCCAACGTGGTGTGTCGCCAGCTGGGCTGCGGCCACGCCATCGCCATGCCGGCACCCATGACCTTCGGCCAGGGGAGCGGGCCCATCTTCTTGGACAACGTGGACTGCAAGGGCCAGGAGGCGGCACTGAGCGAGTGCTGGAGCCCACGGGATGGGGCGTCCACAACTGCTACCCACTACGAGGACGTGGCTGG
Seq A exon
TCCCTTTCCAGAGCTTTCCCCCACATCAGCAAGCGAAGGACCGACCAGCAGGACTGCCACGGCCTCGGTGCAGAACGGGGAAG
Seq C2 exon
GGGACGGCCGCATCCGGCTGGTGAGCGGGGCAGACGCCTGCCAGGGCCGCGTGGAGATCTTCTACCAGGGGAGCTGGGGCACGGTGTGTGACGACGACTGGGGGCTGAGCGACGCCAGCGTGGTCTGCAAGCAGGTGGGCTGCGGCCCGGCTCTGGCGTACAAAAGCAACGCCTATTTCGGCTACGGCATGGGGCACATCCTGCTGGACAACGTCAACTGCGAGGGCAGCGAGCCCATCCTCTCCGCCTGCTACAGCCTCGGCTGGGGCATCCACAACTGTGGCCACCACGAGGATGCCGGGGTCATCTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917-'4-7,'4-5,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.828 C2=0.025
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=96.0)
A:
PF0053013=SRCR=PD(0.1=0.0)
C2:
PF0053013=SRCR=WD(100=92.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGGACAACGTGGACTGC
R:
TGGTAGAAGATCTCCACGCGG
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]