BtaEX6110377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34935998-34938465:-
Coord C1 exon
chr25:34938160-34938465
Coord A exon
chr25:34937177-34937254
Coord C2 exon
chr25:34935998-34936312
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCACCCTGCTTCTTTCCCAGAAT
3' ss Score
9.14
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AACTCAGGCTGGTGGGGGGCCCGAGCCGCTGCCGGGGCCGCCTGGAGGTCCTACACGGGGGCTCCTGGGGCAGCGTCTGTGACGACGACTGGGACGTGGTGGACGCCAATGTGGTGTGTCGTCAGCTGGGCTGCGGCCTGGCGCTGCCCGTGCCCCGGCCCCTCGCCTTCGGCCAGGGCCGAGGCCCCATCCTGCTGGACAACGTGGAGTGCCGCGGGCAGGAAGCCGCCCTGAGCGAGTGCGGCAGCCGAGGCTGGGGCGTGCACAACTGCTTCCACTATGAGGACGTGGCGGTCCTGTGTGACG
Seq A exon
AATTCTTGCCCACGCAGCCCCCAACAAGGAGAGTGTTAACCAGCAGGGAACCCCCTACAACGCCCCAGAATGGAAAAG
Seq C2 exon
GTGAGGGCAGCGTGCGCCTGGTGGGGGGCGCAGGCCCGTGCCAGGGCCGAGTGGAGATCCTGCACGGTGGCCTGTGGGGCACCGTGTGTGACGACGACTGGGGGCTGCCGGACGCAGCCGTGGTGTGCCGCCAGCTGGGCTGCGGGGCGGCCCTGGCAGCCACTACCAACGCCTTCTTCGGCTACGGCACGGGGCACATCTTGCTGGACAACGTGCACTGTGAAGGCGGCGAGCCCCGTCTAGCAGCCTGCCTGAGTCTGGGCTGGGGCGTGCACAACTGCGGGCACCACGAGGACGCCGGCGCGCTCTGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020-'3-4,'3-3,4-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.704 C2=0.028
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGACAACGTGGAGTG
R:
ACCGTGCAGGATCTCCACTC
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]