Special

MmuEX6021628 @ mm9

Exon Skipping

Gene
ENSMUSG00000029699 | Srcrb4d
Description
scavenger receptor cysteine rich domain containing, group B (4 domains) [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:136441441-136443913:-
Coord C1 exon
chr5:136443608-136443913
Coord A exon
chr5:136441945-136442022
Coord C2 exon
chr5:136441441-136441755
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCACCCTACTTTCTCTGCAGAAT
3' ss Score
10.01
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AACTGAGGCTGGTAGGGGGCCCGAGCCGCTGCCGAGGGCGCCTCGAGGTCATGCATAGCGGCTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTAGATGCTAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCACGGCCCCTCGCCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAGTGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGTGGCAGTCCTGTGTGATG
Seq A exon
AATTCTTGCACACACAGCCCCCAACAAGGAAGGTGTTAACCAGTATGGCACCCGCTACAGCCCTCCAAAATGGAAAAG
Seq C2 exon
GTGAGGGCAGTGTGCGTCTGGTGGGCGGCGCCAGCCCGTGTCAAGGCCGAGTGGAGATTCTGCATGGTGGCGTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCAGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGTCGCCTTGGCCGCCACCACTAATGCCTTTTTCGGCTATGGTACCGGGCATATCCTGCTGGACAATGTTCACTGCGAAGGTGGCGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCACGAGGATGCTGGGGTGCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699-'3-7,'3-6,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.233 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0053013=SRCR=WD(100=100.0)

							
A:
NO

							
C2:
PF0053013=SRCR=WD(100=92.5)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000106782





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000106783, ENSMUSP00000117071, ENSMUSP00000123008
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:76398720-76398797 
HIGH PSI
HsaEX6008573
(SSC4D)
Human
(hg19)
chr7:76028037-76028114 
HIGH PSI
HsaEX6008573
(SRCRB4D)
Rat
(rn6)
chr12:23756910-23756987 
ALTERNATIVE
RnoEX6063953
(Ssc4d)
Cow
(bosTau6)
chr25:34937177-34937254 
HIGH PSI
BtaEX6110377
(SSC4D)
Chicken
(galGal4)
chr19:4221761-4221832 
GgaEX6017105
(SSC4D)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCTGGATAATGTGGAGTGCCG

				
R: 
AGAATCTCCACTCGGCCTTGA

				
Band lengths: 
174-252

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"