RnoEX6063953 @ rn6
Exon Skipping
Gene
ENSRNOG00000001435 | Ssc4d
Description
scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol;Acc:1306970]
Coordinates
chr12:23755058-23757834:+
Coord C1 exon
chr12:23755058-23755363
Coord A exon
chr12:23756910-23756987
Coord C2 exon
chr12:23757520-23757834
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTACCCTGCTTTCTCTGCAGAAT
3' ss Score
12.13
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGCTGAGGCTGGTAGGGGGTCCAAGCCGCTGCCGAGGGCGCCTGGAGGTCATGCACAGCGGTTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCGCGGCCCCTCACCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAATGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGTGGCGGTCCTGTGTGATG
Seq A exon
AATTCTTGCATACACAGCCCCCAGCAAGGAAGGTGTTGACCAGTATAGCGCCCCCTACAGCCCTCCAAAATGGGAGAG
Seq C2 exon
GTGAGGGCAGCGTGCGCCTGGCGGGCGGTGCCAGCCCGTGTCAAGGCCGAGTGGAGATTCTGCACGGTGGCCTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCCGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGCCGCCTTGGCTGCCACCACTAACGCCTTTTTCGGCTACGGTACCGGGCATATCCTGCTGGACAACGTTCACTGCGAAGGCGGGGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCACGAGGATGCTGGGGTGCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001435-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAATGTGGAATGCCGC
R:
CACCGTGCAGAATCTCCACTC
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]