HsaEX6008573 @ hg38
Exon Skipping
Gene
ENSG00000146700 | SSC4D
Description
scavenger receptor cysteine rich family member with 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr7:76397518-76400591:-
Coord C1 exon
chr7:76400286-76400591
Coord A exon
chr7:76398720-76398797
Coord C2 exon
chr7:76397518-76397832
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCACTTCACTTCCTTTCCAGAAT
3' ss Score
9.3
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
AGCTGAGGCTGGTGGGGGGCCCCAGCCGCTGCCGGGGCCGCCTGGAAGTCATGCACGGTGGCTCCTGGGGCAGCGTCTGTGATGACGACTGGGACGTGGTGGACGCCAACGTAGTGTGTCGCCAGCTGGGCTGTGGCCTGGCACTGCCCGTGCCACGGCCCCTTGCCTTTGGCCAAGGCCGAGGCCCCATCCTGCTGGACAACGTGGAGTGCCGCGGGCAGGAAGCTGCGCTGAGCGAGTGCGGCAGCCGCGGCTGGGGCGTCCACAATTGCTTTCACTACGAGGATGTGGCTGTCCTGTGTGATG
Seq A exon
AATTCTTGCCAACGCAGCCCCCAACAAGGAAGATGTTAACCAGTAGAGCACCTCCTACGACACTGCCGAATGGAAAAA
Seq C2 exon
GTGAGGGCAGCGTACGCCTGGTAGGGGGCGCGAACCTGTGTCAGGGCCGAGTGGAGATCCTGCACAGTGGCCTGTGGGGCACCGTGTGTGACGACGACTGGGGGCTGCCGGATGCCGCTGTGGTCTGTCGTCAGCTGGGCTGCGGGGCGGCCATGGCCGCCACCACCAACGCCTTCTTCGGCTATGGCACCGGACACATCCTGCTGGACAACGTGCACTGCGAAGGCGGCGAGCCCCGCCTGGCAGCCTGCCAGAGCCTGGGCTGGGGTGTGCACAACTGCGGCCACCACGAGGACGCGGGCGCGCTCTGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700-'6-8,'6-6,7-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTACGAGGATGTGGCTGT
R:
CAGCTGACGACAGACCACAG
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains