Special

RnoEX0086269 @ rn6

Exon Skipping

Gene
Description
scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol;Acc:1306970]
Coordinates
chr12:23756910-23759269:+
Coord C1 exon
chr12:23756910-23756987
Coord A exon
chr12:23757520-23757834
Coord C2 exon
chr12:23759192-23759269
Length
315 bp
Sequences
Splice sites
3' ss Seq
TCTCCATCCACCATCACCAGGTG
3' ss Score
7.58
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
AATTCTTGCATACACAGCCCCCAGCAAGGAAGGTGTTGACCAGTATAGCGCCCCCTACAGCCCTCCAAAATGGGAGAG
Seq A exon
GTGAGGGCAGCGTGCGCCTGGCGGGCGGTGCCAGCCCGTGTCAAGGCCGAGTGGAGATTCTGCACGGTGGCCTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCCGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGCCGCCTTGGCTGCCACCACTAACGCCTTTTTCGGCTACGGTACCGGGCATATCCTGCTGGACAACGTTCACTGCGAAGGCGGGGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCACGAGGATGCTGGGGTGCTCTGTGCAG
Seq C2 exon
TTCTGAGCCCTCCAACTTCCACAGCACTGCCTCCCTCTGTCACCAAAGAAGACTGGGCATGGCACACTGAGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001435-'4-5,'4-4,6-5
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.074 A=0.019 C2=0.333
Domain overlap (PFAM):

C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]