BtaEX0034639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34933197-34937254:-
Coord C1 exon
chr25:34937177-34937254
Coord A exon
chr25:34935998-34936312
Coord C2 exon
chr25:34933197-34933274
Length
315 bp
Sequences
Splice sites
3' ss Seq
GTTCCCGCCCCCATCACCAGGTG
3' ss Score
8.73
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
Exon sequences
Seq C1 exon
AATTCTTGCCCACGCAGCCCCCAACAAGGAGAGTGTTAACCAGCAGGGAACCCCCTACAACGCCCCAGAATGGAAAAG
Seq A exon
GTGAGGGCAGCGTGCGCCTGGTGGGGGGCGCAGGCCCGTGCCAGGGCCGAGTGGAGATCCTGCACGGTGGCCTGTGGGGCACCGTGTGTGACGACGACTGGGGGCTGCCGGACGCAGCCGTGGTGTGCCGCCAGCTGGGCTGCGGGGCGGCCCTGGCAGCCACTACCAACGCCTTCTTCGGCTACGGCACGGGGCACATCTTGCTGGACAACGTGCACTGTGAAGGCGGCGAGCCCCGTCTAGCAGCCTGCCTGAGTCTGGGCTGGGGCGTGCACAACTGCGGGCACCACGAGGACGCCGGCGCGCTCTGCGCAG
Seq C2 exon
TCCTGGGCCACTCGACTCTCACAGCACTGCCACCGTCAGCCACAAGAGTGGACTGGGCCTGGCACACAGAGCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=0.028 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development