MmuEX0044863 @ mm9
Exon Skipping
Gene
ENSMUSG00000029699 | Srcrb4d
Description
scavenger receptor cysteine rich domain containing, group B (4 domains) [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:136440489-136442022:-
Coord C1 exon
chr5:136441945-136442022
Coord A exon
chr5:136441441-136441755
Coord C2 exon
chr5:136440489-136440566
Length
315 bp
Sequences
Splice sites
3' ss Seq
TCTCCATCCACCATCACCAGGTG
3' ss Score
7.58
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
AATTCTTGCACACACAGCCCCCAACAAGGAAGGTGTTAACCAGTATGGCACCCGCTACAGCCCTCCAAAATGGAAAAG
Seq A exon
GTGAGGGCAGTGTGCGTCTGGTGGGCGGCGCCAGCCCGTGTCAAGGCCGAGTGGAGATTCTGCATGGTGGCGTCTGGGGCACTGTATGCGACGATGACTGGGGGCTGCAGGATGCTGCTGTTGTGTGCCGCCAGCTGGGCTGTGGGGTCGCCTTGGCCGCCACCACTAATGCCTTTTTCGGCTATGGTACCGGGCATATCCTGCTGGACAATGTTCACTGCGAAGGTGGCGAGCCCCGCCTGGCAGCCTGCCAGAGCCTAGGCTGGGGCGTGCACAACTGCGGACACCACGAGGATGCTGGGGTGCTCTGTGCAG
Seq C2 exon
TTCTAAGCCCTCCGACTTCCACAGCTCTGCCTCCGTCTGTCACAAAAGAAGACTGGGCACGGCACACTGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.000 C2=0.701
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: