DreEX6000681 @ danRer10
Exon Skipping
Gene
ENSDARG00000018770 | SSC5D (1 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5475074-5491024:-
Coord C1 exon
chr4:5490695-5491024
Coord A exon
chr4:5475773-5476102
Coord C2 exon
chr4:5475074-5475388
Length
330 bp
Sequences
Splice sites
3' ss Seq
TATAATTCATTCCGATTTAGGGA
3' ss Score
8.12
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TAGATATAGCCTCTAAAAGGGTTGACCTGAGGTTGGCAAATGGCCGTGACTCTTGTTCTGGACGAGTTGAGGTTTTCTATAATGGCTCATGGGGAACAGTGAGTGATGATGGCTGGGATCTGTCAGACGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGGAATGTGATTGAGGCAAAGAGCGCTGCTTATTTTGGACAAGGAACAGGACCGGTATGGTTGAACACAGTGCAATGCAATGGGACTGAGAACTCGTTGGTGAACTGTACATCCTCTCAATGGGGAATACAGAGTGGTAACCATTCAAAAGACTCCGGAGTCATCTGTAACA
Seq A exon
GGAATGGACTTCCAGTGGAAGCATCTCTGAGATTGATGAATGGTGGGAACTCTTGCTCTGGACGAGTGGAGGTTTTCTATAATGGCGCATGGGGAACGGTGTGTGATGATTCCTGGGATTTGTCAGACGCTGCGGTGGTGTGTAGAGAGATCGGATGTGGGAATGCAACTGAGGCAAAGAGCAATGCTTATTTTGGTCCAGGAACTGGATCAATATGGATGGATGATGTGCTTTGCATTGGCAGCGAGTCCTCTCTGGTAGACTGTAAGAGAAGCGCGTGGGGAATACATAACTGTGTGCATGGTGAAGATGCTGGAGTCATTTGTGAAG
Seq C2 exon
ATTTAGGCCCTATTAGGTTGGCAAATGGCCGTGACTCTTGTTCTGGGCGAGTGGAGTGGATTCATAATAAGACATGGGGAACAGTGAGTGATGATGGCTGGGATCTGTCAGACGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGGAATGTGATTGAGGCAAAGAGCGCTGCTTATTTTGGACAAGGAACAGGACCGGTATGGTTGGGCGCAGTGCAATGCTATGGGACCGAGGACTCGTTGATGAACTGTACATCCACAAAATGGGAAATACAGAGCGGTGACCATTCAAGAGATGCTGGAGTTATCTGTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018770-'1-4,'1-3,3-4=AN
Average complexity
A_C3
Mappability confidence:
86%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=88.3)
A:
PF0053013=SRCR=WD(100=88.3)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATGGGGAACAGTGAGTG
R:
TCCCAGCCATCATCACTCACT
Band lengths:
349-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]