GgaEX6017103 @ galGal4
Exon Skipping
Gene
ENSGALG00000001917 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr19:4221761-4223315:+
Coord C1 exon
chr19:4221761-4221832
Coord A exon
chr19:4222217-4222531
Coord C2 exon
chr19:4223235-4223315
Length
315 bp
Sequences
Splice sites
3' ss Seq
CCCATGCTGTCACCCTCCAGGGG
3' ss Score
9.17
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
AGCTTTCCCCCACATCAGCAAGCGAAGGACCGACCAGCAGGACTGCCACGGCCTCGGTGCAGAACGGGGAAG
Seq A exon
GGGACGGCCGCATCCGGCTGGTGAGCGGGGCAGACGCCTGCCAGGGCCGCGTGGAGATCTTCTACCAGGGGAGCTGGGGCACGGTGTGTGACGACGACTGGGGGCTGAGCGACGCCAGCGTGGTCTGCAAGCAGGTGGGCTGCGGCCCGGCTCTGGCGTACAAAAGCAACGCCTATTTCGGCTACGGCATGGGGCACATCCTGCTGGACAACGTCAACTGCGAGGGCAGCGAGCCCATCCTCTCCGCCTGCTACAGCCTCGGCTGGGGCATCCACAACTGTGGCCACCACGAGGATGCCGGGGTCATCTGCATGG
Seq C2 exon
GTCTGGACACATCCACCGTCACATCCTTCACCACCTCCACAGCCCTGGACTATGAAGAGATGCTCACTGCCACAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917-'5-6,'5-5,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]