GgaEX6017103 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:4190126-4191471:+
Coord C1 exon
chr19:4190126-4190287
Coord A exon
chr19:4190373-4190687
Coord C2 exon
chr19:4191391-4191471
Length
315 bp
Sequences
Splice sites
3' ss Seq
CCCATGCTGTCACCCTCCAGGGG
3' ss Score
9.17
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
TGTTTCCCCTCCACCAAACAGCCCTGCTGGGCTGGCCAAGAGAAGACCCCCAGAACCTCCACCTTCACGCTCAAATCCCGGTCCAAATATTCCTGCAGGATCCCATAAATTGCACCGCCCTAAAGCAGATCCTCCTCCAGGAACTTGGGTGGTTTCACCACC
Seq A exon
GGGACGGCCGCATCCGGCTGGTGAGCGGGGCAGACGCCTGCCAGGGCCGCGTGGAGATCTTCTACCAGGGGAGCTGGGGCACGGTGTGTGACGACGACTGGGGGCTGAGCGACGCCAGCGTGGTCTGCAAGCAGGTGGGCTGCGGCCCGGCTCTGGCGTACAAAAGCAACGCCTATTTCGGCTACGGCATGGGGCACATCCTGCTGGACAACGTCAACTGCGAGGGCAGCGAGCCCATCCTCTCCGCCTGCTACAGCCTCGGCTGGGGCATCCACAACTGTGGCCACCACGAGGATGCCGGGGTCATCTGCATGG
Seq C2 exon
GTCTGGACACATCCACCGTCACATCCTTCACCACCTCCACAGCCCTGGACTATGAAGAGATGCTCACTGCCACAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917-'7-10,'7-7,9-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.025 C2=0.407
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCCCTCCACCAAACAG
R:
CTGTGGCTGTGGCAGTGAG
Band lengths:
243-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]