GgaEX6017211 @ galGal3
Exon Skipping
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4895033-4896194:-
Coord C1 exon
chr19:4896006-4896194
Coord A exon
chr19:4895672-4895853
Coord C2 exon
chr19:4895033-4895175
Length
182 bp
Sequences
Splice sites
3' ss Seq
ACGGCTCTCTTCTGTTGCAGTGG
3' ss Score
9.48
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACTGGTCCTGTTATTGACATGCCAGTGCCCGCCAGCTTCAATGACATCACTCAGGACCCCCACTTGGAAAACTACATCGGATGGGTGTGGTATGAGAAGGAGGTGCTGATTCCTCAGCGTTGGCTGCAGGACGACCTCAGCACCAGGGTGGTGCTCCGGTTCGGCAGTGCCCACTACTACTCCATCGTG
Seq A exon
TGGGTGAATGGAGTGCAAGTTGTGGAGCATGAAGGCGGCCACCTCCCTTTTGAAGCAGATATAAGCAGGATTGTCCAGCGCAGCCCAGGGGTTCTCTGCCGCATCACTGTTGCGCTGAACAACACTCTGACGCCGCACACTCTGCCTCCGGGGTCAATTCAGTACATGAATGACAGAACAAG
Seq C2 exon
GTATCCCAAGAACTATTTTGTACAGAACACCAGGTTTGATTTCTTTAATTATGCTGGAATCCATCGCCCGGTTGTGCTTTACACCACACCTTCTGTCTACATAGATGATATTACTGTGACAACTACTTCATCAGAGAGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(32.6=100)
A:
PF0283713=Glyco_hydro_2_N=FE(31.6=100)
C2:
PF0283713=Glyco_hydro_2_N=PD(15.8=61.2),PF0070316=Glyco_hydro_2=PU(15.7=32.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGACATGCCAGTGCCCG
R:
GGGCGATGGATTCCAGCATAA
Band lengths:
248-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]