RnoEX0040719 @ rn6
Exon Skipping
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30204173-30205326:+
Coord C1 exon
chr12:30204173-30204358
Coord A exon
chr12:30204580-30204761
Coord C2 exon
chr12:30205184-30205326
Length
182 bp
Sequences
Splice sites
3' ss Seq
TAATTTCCTTGTGTCCGCAGTGG
3' ss Score
8.65
5' ss Seq
CATGTAAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
TCGGGCCCAACCTTGGACATGCCGGTCCCTTCCAGCTTCAATGACATCACCCAAGAAGCAGAGCTTCGGAACTTCATTGGCTGGGTGTGGTATGAACGGGAAGCAGTGCTTCCACAGCGATGGACCCAGGACACCGACAGGAGAGTGGTGTTGAGAATCAACAGCGCCCATTACTATGCAGTTGTG
Seq A exon
TGGGTGAATGGGATTCATGTGGTGGAACATGAGGGAGGTCACCTCCCCTTTGAGGCTGACATCACCAAGCTGGTCCAGAGTGGGCCCCTGACCACCTTCCGGGTCACCATCGCCATCAACAACACACTGACCCCTTATACCCTTCCACCGGGGACCATTGTCTACAAGACTGATCCTTCCAT
Seq C2 exon
GTATCCCAAGGGTTACTTCGTCCAGGACATAAGCTTCGACTTCTTCAACTATGCGGGGCTGCACCGGTCTGTGGTCCTGTACACCACCCCTACCACCTATATCGATGATATCACTGTGACCACTGACGTGGACCGGGACGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283713=Glyco_hydro_2_N=FE(32.3=100)
A:
PF0283713=Glyco_hydro_2_N=FE(31.7=100)
C2:
PF0283713=Glyco_hydro_2_N=PD(15.9=61.2),PF0070316=Glyco_hydro_2=PU(16.2=32.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCCCTTCCAGCTTCAATG
R:
TGGTGTACAGGACCACAGACC
Band lengths:
250-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]