GgaEX6017955 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:440710-441515:+
Coord C1 exon
chr2:440710-440874
Coord A exon
chr2:441130-441338
Coord C2 exon
chr2:441420-441515
Length
209 bp
Sequences
Splice sites
3' ss Seq
GCATCCCGTGCTGCTGGCAGCCT
3' ss Score
3.66
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TGGATTGCCTGTGGTCTCCGTGGTCGCCCTGGTCCCCCTGCTCGGTGACGTGTGGGATGGGTGAGCGGCTCTCACACCGGCACCCACTGCGGCAGCGCCTCTATGAGGGGGCTGAGTGCCTGGGGCCCCCCGTGCGCCGGGCTGCCTGCCACCTCCCCGACTGCG
Seq A exon
CCTGTCCGGAGGGGGAGCGCTGGCAGGGCCCTGAGGTGCCACCAGGCTGTGAGCAGAGCTGCAGGGACATCCTCGATGAGACCCCTGCAAACTGCACCCCTTCCCCCTCCCCCGGCTGCACCTGTGAGCCCGGCCACTACCGCAACAGCAGCGGCCACTGTGTGCCCTCCACCCTCTGTGAGTGCCTGCACCAGGGGCAGCTCCACCAG
Seq C2 exon
CCTGGCAGCGAGTGGCAGGAGCAGTGCGCGAGGTGCCGCTGTGTGGATGGCAAAGCCAACTGCACCGATGGCTGCACGCCGCTCTCCTGTCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'99-100,'99-99,100-100=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF053758=Pacifastin_I=PD(3.3=1.8),PF0009014=TSP_1=WD(100=89.3),PF0182612=TIL=PU(10.4=12.5)
A:
PF0182612=TIL=PD(88.1=84.3),PF0009313=VWC=PU(14.3=11.4),PF053758=Pacifastin_I=PU(2.7=1.4)
C2:
PF0009313=VWC=FE(55.4=100),PF053758=Pacifastin_I=FE(83.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGCCTGTGGTCTCCG
R:
CTCGGGACAGGAGAGCGG
Band lengths:
261-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]