RnoEX0086320 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78129491-78131105:+
Coord C1 exon
chr4:78129491-78129537
Coord A exon
chr4:78130286-78130494
Coord C2 exon
chr4:78131010-78131105
Length
209 bp
Sequences
Splice sites
3' ss Seq
AGTGGATGGTCTTCCTGCAGAGT
3' ss Score
6.19
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
CACCTGTCAAGGAGGAGTCTTCACCTGCTCCCATACGGACTGTCAGG
Seq A exon
AGTGCCCTCCTGGGGAAATATTGCAGCTTGGGGAGCTGAGGCCTTGCGAGAAGACATGCCTCGAAATGAACAAGACACAGGCTTGGAGCAACTGCACTGAGGCTCAGGTTCCAGGCTGTGTGTGTCAGCTGGGGCACTTCCGCAGCCACACAGGTCTCTGTGTTCCCGAAGACCACTGTGAATGTTGGCACCATGGGAGTCCCCATCTG
Seq C2 exon
CCTGGATCTGAATGGCAGGAGGCCTGTGAGAGCTGCCGCTGTCTCCACGGGAAGAGTGTTTGCACTCAACACTGCCCAGAACTCAGCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'103-108,'103-107,104-108
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0182612=TIL=WD(100=84.3),PF0009313=VWC=PU(14.3=11.4),PF053758=Pacifastin_I=PU(0.1=0.0)
C2:
PF0009313=VWC=FE(55.4=100),PF053758=Pacifastin_I=FE(91.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAAGGAGGAGTCTTCACC
R:
CTGAGCACAGCTGAGTTCTGG
Band lengths:
140-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]