HsaEX6011170 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149825275-149828733:+
Coord C1 exon
chr7:149825275-149825391
Coord A exon
chr7:149827769-149827985
Coord C2 exon
chr7:149828638-149828733
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGGATGGTCTTCCCTGGCAGAGT
3' ss Score
7.17
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTTAGAGCTGCGAGGCCCAAGACACTGTATTCACCCTGGACTGTGCCAACCAGTGCCCACACAGCTGTGCCGACCTCTGGGACCGCGTTCAGTGTCTGCAGGGACCCTGCCGCCCAG
Seq A exon
AGTGCCCCCTGGGGAAACGTGGCAGCAGGTGGCCCCGGGGGAGCTGGGGCTCTGCGAGCAGACGTGCCTGGAGATGAACGCCACAAAGACCCAGAGTAACTGCAGTTCAGCTCGAGCCTCGGGCTGCGTGTGCCAGCCCGGGCACTTCCGCAGCCAGGCAGGCCCCTGCGTCCCCGAAGACCACTGCGAGTGCTGGCACCTTGGGCGTCCCCACCTG
Seq C2 exon
CCTGGATCTGAATGGCAGGAGGCCTGTGAGAGCTGCCTCTGCCTCAGTGGGAGGCCTGTCTGCACCCAGCACTGCTCCCCACTCACCTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'118-143,'118-141,127-143=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGCTGCGAGGCCCAAG
R:
CTGAGCACAGGTGAGTGGGG
Band lengths:
212-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains