GgaEX6018695 @ galGal3
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17867900-17889708:-
Coord C1 exon
chr2:17889142-17889708
Coord A exon
chr2:17877310-17877342
Coord C2 exon
chr2:17867900-17868078
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCCTAACTCAAAAGCTT
3' ss Score
5.46
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTTTTTGAGTTTTACAGAAACAGATCTGAGAAGTGACAGTTTCACTCATTCTCAACAGGCTTCGTCAACCAAAGATGTACATAAAGGAGAGACTGGGAGTCAAGAGGGAGGTGTCAACTGTTTCACTTCCTTAATTGGTCTCCCTTCATCATCAGCTGTTTCCCAATCTAAAAACTTTGACAGCTCACCTGGAGACATAAGTAATTCAAGCCTTACTTCTACAGCATACAAAAGAGCTCAAACTTCTGGAATAGAAGAGGAAACTGTAACAGAGAAGAAACGGAAAGGAAATAAGCAAAGTAAACATGGGCCTGGTAGACCCAAAGGAAATAAAAGTCAAGAAAATATTTCCCATCTTTCAGTTTCTTCCGCTTCCCCAACTTCATCTGTGGCATCTGCTGCAGGAAGTGTGACAAGCTCTGGTCTTCAAAAATCTCCAACTTTGCTCAGGAATGGAAGTTTACAAAGTCTTAGTGTTGGCTCATCTCCAGTGGGTTCAG
Seq A exon
CTTTCTCGAAGTTGATGAATACCATACATAATG
Seq C2 exon
GTATTTTTAGCAGCAATGATGTAGCAGTATCATTTCCAAATGCAGTATCTGGCTCAGGATCTAGCACTCCCGTTTCCAGTTCTCATTTACCTCAGCAGGCTTCAGGCCACTTGCAGCAAGTGGGAGCTCTATCACCTTCAACTGCGCCTTCTATAACTACTGTTGTTGCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-'15-28,'15-26,18-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.000 C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTGGCTCATCTCCAGTGG
R:
TGAGAACTGGAAACGGGAGTG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]