MmuEX0029217 @ mm10
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18170254-18186396:+
Coord C1 exon
chr2:18170254-18170298
Coord A exon
chr2:18171043-18171075
Coord C2 exon
chr2:18186218-18186396
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCCTTACTCAAAAGCCT
3' ss Score
5.03
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AAATTTCCATGCAGTATCGACATGATGGAGCTTGTCCAACAACTA
Seq A exon
CCTTCTCAGAGTTGCTGAATGCAATACACAATG
Seq C2 exon
GTATTTATAACAGCAATGATGTAGCCGTATCCTTTCCAAACGTGGTGTCTGGCTCAGGATCTAGTACTCCTGTCTCTAGCTCTCATATACCTCAGCAGTCATCTGGTCATTTGCAACAGGTGGGAGCTCTCTCCCCCTCAGCTGCGTCATCTGTAACCCCTGCTGCTGCTACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-'53-72,'53-65,55-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.546 A=0.143 C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCAGTATCGACATGATGGA
R:
ACAGGAGTACTAGATCCTGAGCC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types