RnoEX0054833 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84944667-84957070:+
Coord C1 exon
chr17:84944667-84944711
Coord A exon
chr17:84945517-84945549
Coord C2 exon
chr17:84956892-84957070
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCCTTACTTAAAAGCCT
3' ss Score
6.85
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
AAATTTCCATGCAGTATCGACATGATGGAGCTTGTCCAACAACTA
Seq A exon
CCTTCTCAGAGTTGCTGAATGCAATACACAATG
Seq C2 exon
GTATTTATAACAGCAATGATGTAGCCGTTTCCTTCCCAAACGTGGTGTCTGGCTCAGGATCGAGCACTCCCGTCTCCAGCTCTCATATACCTCAGCAGTCGTCTGGGCATTTGCAACAGGTGGGAGCTCTCTCCCCCTCGGCTGCGTCATCTGTAACCCCCGCTGCTGCTACAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-'32-35,'32-34,33-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=0.167 C2=0.790
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000034157fB8798
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTATCGACATGATGGAGC
R:
TATGAGAGCTGGAGACGGGAG
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]