HsaEX0039550 @ hg38
Exon Skipping
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr10:21681332-21688538:+
Coord C1 exon
chr10:21681332-21681376
Coord A exon
chr10:21682225-21682257
Coord C2 exon
chr10:21688491-21688538
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCCTTACTTAAAAGCGT
3' ss Score
7.12
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
AAATTTCCATGCAGTATCGGCATGATGGAGCTTGCCCAACAACTA
Seq A exon
CGTTCTCAGAGTTGCTGAATGCAATACACAACG
Seq C2 exon
ACAGAGGTGACAGTTCTACACTAACAAAGCAAGAACTTAAATTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403-'79-77,'79-75,80-77
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.710 A=0.375 C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTCCATGCAGTATCGGCA
R:
AGTTCTTGCTTTGTTAGTGTAGAACT
Band lengths:
81-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development