GgaEX6019226 @ galGal4
Exon Skipping
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30776320-30780957:-
Coord C1 exon
chr2:30780835-30780957
Coord A exon
chr2:30779487-30779665
Coord C2 exon
chr2:30776320-30776410
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTCCGTGTCTTCCAGCAA
3' ss Score
8.78
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AACCCATTTGCTGAAAATGAAGAATTGCAGCAACGGTCTGTGAGAATTTTGGGAATCAACACCTGGGATCTTGCCTTAGAACTAACCACCTTCGACTGGAGCCTCTTCAATGCAATTCATGAG
Seq A exon
CAAGAGCTGATATACTTCACATTCAGCAGACAGGGCAGTGCTGAAAACACTGAGAATCTCAGTCTTCTACTTCAAAGATGCAACGAGGTCCAGCTTTGGGTTGCCACTGAGATACTTCTCTGCAGCCAGCTCTGCAAACGTGTACAGCTAGTCAAAAAGTTCATCAAGATTGCAGCCCA
Seq C2 exon
CTGTAAAGCCCAAAGAAATCTGAATTCATTCTTTGCCATTGTTATGGGTCTCAACACTGCATCTGTCAGCCGGCTGTCTCAGACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910-'35-41,'35-39,36-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(13.0=58.5)
A:
PF0061714=RasGEF=FE(31.9=100)
C2:
PF0061714=RasGEF=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGAAGAATTGCAGCAACGG
R:
CTCCCAGGTCTGAGACAGCC
Band lengths:
202-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]