MmuEX0038805 @ mm9
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:118967130-118978190:+
Coord C1 exon
chr12:118967130-118967252
Coord A exon
chr12:118969013-118969191
Coord C2 exon
chr12:118978100-118978190
Length
179 bp
Sequences
Splice sites
3' ss Seq
AAAATACATGTTTCTTCCAGCAA
3' ss Score
5.03
5' ss Seq
TCAGTAGGT
5' ss Score
4.29
Exon sequences
Seq C1 exon
AATCCTTTGGCAGAAAATGAGGAATCCCAGCAAAGGTCAATGAGGATTTTGGGGATGAACACGTGGGACCTTGCTCTGGAATTAATGAGTTTTGATTGGAGTCTGTTCAATTCAATCCACGAG
Seq A exon
CAAGAGCTGATCTACTTCACATTCAGCAGACAGGGGAACGGAGAGAATACTGTGAACCTCAGCCTTCTGCTCCAGAGATGTAACGAGGTCCAGCTCTGGGTAGCCACAGAGATTCTGCTCTGCAGCCAGCTAGGCAAGCGCGTGCAGCTGGTGAAAAAATTCATCAAGATTGCAGCTCA
Seq C2 exon
CTGCAAAGCCCAACAGAACCTAAACTCTTTCTTTGCCATCGTGATGGGTCTCAACACCGCCTCTGTCAGCCGGCTATCACAGACCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'24-24,'24-23,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(13.0=58.5)
A:
PF0061714=RasGEF=FE(31.9=100)
C2:
PF0061714=RasGEF=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGGCAGAAAATGAGGA
R:
CTCCCAGGTCTGTGATAGCCG
Band lengths:
212-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: