GgaEX6019678 @ galGal4
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
catenin beta-1 [Source:RefSeq peptide;Acc:NP_990412]
Coordinates
chr2:44040812-44041816:+
Coord C1 exon
chr2:44040812-44041050
Coord A exon
chr2:44041135-44041336
Coord C2 exon
chr2:44041672-44041816
Length
202 bp
Sequences
Splice sites
3' ss Seq
TCAGGCTTTTCCTTTTGTAGGTC
3' ss Score
9.94
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGGTGGTAAACAAGGCTGCGGTTATGGTTCATCAGCTATCCAAAAAGGAAGCATCTCGCCATGCTATTATGAGGTCTCCTCAAATGGTATCTGCAATTGTGCGTACCATGCAAAATACAAATGATGTGGAAACAGCCCGCTGTACTGCAGGCACACTACACAATCTCTCACATCACCGTGAAGGCTTGTTGGCAATCTTCAAATCAGGAGGCATCCCTGCGTTGGTTAAAATGCTTGG
Seq A exon
GTCTCCGGTGGATTCTGTGTTGTTCTATGCCATTACTACTCTTCACAATCTCCTGTTACATCAGGAGGGAGCCAAAATGGCTGTCCGTCTGGCTGGAGGGCTGCAAAAAATGGTTGCCCTGCTCAACAAGACAAATGTGAAATTCTTGGCCATCACGACAGACTGTCTTCAGATTTTAGCCTATGGCAATCAAGAAAGTAAG
Seq C2 exon
CTGATTATTCTGGCAAGCGGTGGACCCCAAGCTCTAGTAAACATAATGAGGACCTACACTTATGAGAAACTATTGTGGACCACAAGTAGGGTGCTGAAGGTGTTGTCAGTCTGCTCCAGCAACAAACCTGCTATTGTTGAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'19-19,'19-17,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(52.0=66.2),PF0051418=Arm=PU(51.2=26.2)
A:
PF0051418=Arm=PD(46.3=27.9)
C2:
PF0051418=Arm=PU(26.8=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAAGGAAGCATCTCGCC
R:
CCTTCAGCACCCTACTTGTGG
Band lengths:
299-501
Functional annotations
There are 1 annotated functions for this event
PMID: 11533658
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation, glutathione s tranferase tag, phosphatase assay, pull down. ELM ID: ELMI001964; ELM sequence: MLGSPV; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]