BtaEX6093581 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016420 | CTNNB1
Description
Bos taurus catenin (cadherin-associated protein), beta 1, 88kDa (CTNNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076141]
Coordinates
chr22:13877274-13879074:+
Coord C1 exon
chr22:13877274-13877512
Coord A exon
chr22:13877602-13877803
Coord C2 exon
chr22:13878930-13879074
Length
202 bp
Sequences
Splice sites
3' ss Seq
ACTTTTTTCCTTCTTCCCAGTTC
3' ss Score
10.01
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGGTGGTTAATAAGGCTGCAGTTATGGTCCATCAGCTTTCTAAAAAGGAAGCTTCGAGACACGCCATCATGCGTTCTCCTCAGATGGTGTCTGCTATCGTACGCACCATGCAGAACACAAATGACGTGGAGACAGCTCGCTGCACTGCTGGGACCTTGCACAATCTTTCCCACCATCGTGAGGGCTTGCTGGCCATCTTTAAATCTGGGGGCATTCCTGCCCTGGTGAAGATGCTCGG
Seq A exon
TTCACCAGTGGATTCTGTATTGTTTTATGCCATTACAACTCTCCACAACCTTTTATTGCATCAGGAAGGAGCTAAAATGGCCGTGCGTTTAGCTGGCGGGCTGCAGAAAATGGTTGCCTTGCTCAACAAAACGAATGTTAAATTCTTGGCTATTACAACAGATTGTCTTCAGATTCTAGCTTATGGCAATCAAGAAAGCAAG
Seq C2 exon
CTCATCATCCTGGCTAGTGGTGGACCTCAAGCTCTAGTGAATATAATGAGGACCTACACTTATGAGAAGCTACTGTGGACCACAAGCAGAGTGCTGAAGGTGCTGTCTGTCTGCTCCAGTAACAAGCCGGCTATTGTAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016420-'18-13,'18-12,19-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(52.0=66.2),PF0051418=Arm=PU(51.2=26.2)
A:
PF0051418=Arm=PD(46.3=27.9)
C2:
PF0051418=Arm=PU(26.8=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGAAGCTTCGAGACACGC
R:
GACAGCACCTTCAGCACTCTG
Band lengths:
302-504
Functional annotations
There are 1 annotated functions for this event
PMID: 11533658
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation, glutathione s tranferase tag, phosphatase assay, pull down. ELM ID: ELMI001964; ELM sequence: MLGSPV; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]