GgaEX6023918 @ galGal3
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
NA
Coordinates
chr21:2711301-2713170:-
Coord C1 exon
chr21:2712970-2713170
Coord A exon
chr21:2711535-2711680
Coord C2 exon
chr21:2711301-2711406
Length
146 bp
Sequences
Splice sites
3' ss Seq
CACGCTTCTCTTCCATCCAGAAT
3' ss Score
9.01
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
AGTCCTGCGGCAGCACGGTGTGCTCCTTCGGCAGCACGTGTGTGGGTGGGCAGTGCGTGTGTCCCCGCTGTGAGCAGCAGCCCCTGGCCCAGGTCTGTGGCACCGATGGCCTCACCTATGACAACCGCTGCGAGCTCCGAGCAGCCTCCTGCCAACAGCAGAAGAGCATCGAGGTGGCCAAGATGGGGCCGTGTGAGGACG
Seq A exon
AATGTGGCTCAGGGGGCTCAGGCTCTGGTGATGGGAGTGAGTGTGAGCAGGACCGGTGCCGGCACTACGGGGGCTGGTGGGATGAGGATGCAGAGGACGACCGCTGTGTGTGTGACTTCACCTGCCTGGCGGTGCCACGCAGCCCG
Seq C2 exon
GTCTGTGGCTCTGACGATGTGACCTACGCCAATGAGTGTGAGCTGAAGAAGACGAGGTGTGAAAAACGCCAGGACCTCTATGTCACCAGCCAAGGAGCCTGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=66.2)
A:
PF0005016=Kazal_1=PU(34.0=36.7)
C2:
PF0005016=Kazal_1=PD(62.3=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGCAGCACGTGTGT
R:
TCCTGGCGTTTTTCACACCTC
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]