MmuEX0004316 @ mm10
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:156176219-156176834:-
Coord C1 exon
chr4:156176634-156176834
Coord A exon
chr4:156176404-156176552
Coord C2 exon
chr4:156176219-156176324
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACCGCTCTGTTTTCCTGCAGCTG
3' ss Score
12.5
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
AGACCTGTGGAGAAACAGTTTGTACCTTTGGGGCTGTGTGCTCAGCTGGACAGTGTGTATGTCCCCGTTGTGAGCACCCCCCACCTGGCCCTGTGTGCGGCAGTGATGGCGTCACCTACCTCAGTGCCTGTGAGCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCGG
Seq A exon
CTGAGTGTGGCTCAGGGGGCTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGAGCTGTGTCGGCAGCATGGTGGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGTGTCTGTGACTTTAGTTGCCAGAGTGTCCTTAAAAGCCCA
Seq C2 exon
GTGTGTGGCTCAGATGGAGTCACCTATAGCACGGAGTGCCATCTGAAGAAGGCCAGATGTGAAGCGCGGCAAGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936-'38-42,'38-41,40-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=66.2)
A:
PF0764810=Kazal_2=PU(16.7=14.0)
C2:
PF0764810=Kazal_2=PD(78.6=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACCTTTGGGGCTGTGTG
R:
CGCTTCACATCTGGCCTTCTT
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types