GgaEX6023918 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2726579-2728448:-
Coord C1 exon
chr21:2728248-2728448
Coord A exon
chr21:2726813-2726958
Coord C2 exon
chr21:2726579-2726684
Length
146 bp
Sequences
Splice sites
3' ss Seq
CACGCTTCTCTTCCATCCAGAAT
3' ss Score
9.01
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
AGTCCTGCGGCAGCACGGTGTGCTCCTTCGGCAGCACGTGTGTGGGTGGGCAGTGCGTGTGTCCCCGCTGTGAGCAGCAGCCCCTGGCCCAGGTCTGTGGCACCGATGGCCTCACCTATGACAACCGCTGCGAGCTCCGAGCAGCCTCCTGCCAACAGCAGAAGAGCATCGAGGTGGCCAAGATGGGGCCGTGTGAGGACG
Seq A exon
AATGTGGCTCAGGGGGCTCAGGCTCTGGTGATGGGAGTGAGTGTGAGCAGGACCGGTGCCGGCACTACGGGGGCTGGTGGGATGAGGATGCAGAGGACGACCGCTGTGTGTGTGACTTCACCTGCCTGGCGGTGCCACGCAGCCCG
Seq C2 exon
GTCTGTGGCTCTGACGATGTGACCTACGCCAATGAGTGTGAGCTGAAGAAGACGAGGTGTGAAAAACGCCAGGACCTCTATGTCACCAGCCAAGGAGCCTGCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'30-27,'30-26,31-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=66.2)
A:
PF0005016=Kazal_1=PU(34.0=36.7)
C2:
PF0005016=Kazal_1=PD(62.3=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGCAGCACGTGTGT
R:
TCCTGGCGTTTTTCACACCTC
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]