GgaEX6023919 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2724813-2726374:-
Coord C1 exon
chr21:2726261-2726374
Coord A exon
chr21:2725106-2725270
Coord C2 exon
chr21:2724813-2724956
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCTTGGCTTGCAGGCA
3' ss Score
10.2
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCCTCACCACGACCCCACCGCCTCTCCCAGTTGTGCACTGCAGTCAGACCATCTATGGGTGCTGCCCGGACAACATGACCCTGGCGCTCGGAGTGGGTGCAGCCGGGTGCCCAA
Seq A exon
GCACCTGCCAGTGCAACCCCTATGGCTCCTATGGAGGAACCTGCGACCCTGCCACGGGGCAGTGCTCCTGCAAGCCAGGTGTTGGGGGGCTCAAGTGTGACCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGCATCGTCACCGACAGCAAGAGCGGCTGCACGC
Seq C2 exon
CCTGTAACTGCGACCCGGTGGGCTCAGTGCGTGATGACTGCGAGCAGATGACTGGGCTCTGCTCCTGCAAGACTGGGATCACTGGCATGAAGTGCAACCAGTGTCCCAACGGCAGCAAGATGGGCATGGCTGGCTGTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'33-30,'33-29,34-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=92.9)
C2:
PF0005319=Laminin_EGF=PU(85.5=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCTCTCCCAGTTGTG
R:
CTTTTTCACAGCCAGCCATGC
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]