MmuEX0004299 @ mm10
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:156173003-156178635:-
Coord C1 exon
chr4:156178429-156178635
Coord A exon
chr4:156174856-156175020
Coord C2 exon
chr4:156173003-156173130
Length
165 bp
Sequences
Splice sites
3' ss Seq
AGTGCTTTCTCCCCTTGTAGGCA
3' ss Score
10.48
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
ACCAGTGCCCGGAGACCTGCCAGTTTAACTCTGTATGCCTGTCCCGCCGCGGCCGTCCCCACTGTTCCTGCGATCGCGTCACCTGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGATGGGCACACGTATGACAATGACTGTTGGCGCCAACAGGCCGAGTGTCGACAACAGCAGACCATTCCCCCCAAGCACCAGGGCCCGTGTG
Seq A exon
GCACCTGCCATTGCAACCCACACGGCTCCTATAGCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTCAGGTGTGATCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGCATTGTCACCGATGGACATAGTGGTTGCACTC
Seq C2 exon
CTACCAAGGCATTCCAGGGCGTGCTGGAGCTTGAGGGGGTCGAGGGACAGGAACTGTTCTACACACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAGACTGCAAGGAGCATTGAGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936_MULTIEX2-8/15=C1-15
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.225
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(95.8=97.1)
A:
PF0005319=Laminin_EGF=WD(100=92.9)
C2:
PF0139015=SEA=FE(38.9=100)
Main Skipping Isoform:
ENSMUST00000105575fB354
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGTGATGGGGCTTACA
R:
CTCCTTGCAGTCTCCCCAAAC
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types