MmuEX0004299 @ mm9
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:155548680-155549325:-
Coord C1 exon
chr4:155549209-155549325
Coord A exon
chr4:155548965-155549129
Coord C2 exon
chr4:155548680-155548823
Length
165 bp
Sequences
Splice sites
3' ss Seq
AGTGCTTTCTCCCCTTGTAGGCA
3' ss Score
10.48
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCCCTACCTTGGCTCCACTGCTACCTATGGCCTCCCCACACTGTGCCCAAACCCCCTATGGCTGCTGCCAGGACAATGTCACTGCTGCCCAGGGTGTGGGCTTGGCTGGCTGTCCCA
Seq A exon
GCACCTGCCATTGCAACCCACACGGCTCCTATAGCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTCAGGTGTGATCGCTGTGAGCCTGGCTTCTGGAACTTCCGTGGCATTGTCACCGATGGACATAGTGGTTGCACTC
Seq C2 exon
CCTGCAGCTGTGACCCTCGGGGTGCTGTAAGAGATGACTGTGAGCAGATGACTGGATTGTGTTCCTGTAGACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTTGGCTGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=WD(100=92.9)
C2:
PF0005319=Laminin_EGF=PU(85.5=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGCTACCTATGGCCTC
R:
CTGCTTCACAGCCAAGATGG
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: