GgaEX6026041 @ galGal3
Exon Skipping
Gene
ENSGALG00000024167 | ISG20L2
Description
NA
Coordinates
chr25:863078-864563:+
Coord C1 exon
chr25:863078-863346
Coord A exon
chr25:863688-863888
Coord C2 exon
chr25:864286-864563
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCCTTTCCTCCCCAGATC
3' ss Score
13.11
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
AAAAGCCGCTAAGGGCCCCGGTGCGAGCCACCGGGTTGCCCCCACCGCCCAGCAAGCTCGTTGCTATCGACTGTGAGATGGTGGGCACCGGGCCCGGCGGGTGCACCAGCTCCTTGGCCCGCTGTAGCATTGTGGGCTATGAGGGCGACGTGCTGTATGACTCCTACGTGCGGCCCACGGAGCCCATCGTGGACTACCGCACCCGCTGGAGCGGCATCCGCAAGAAGCACATGGTCAACGCTGTCCCTTTCTGCAAGGCCCAGCGGGAG
Seq A exon
ATCCTGAAGATCCTCTCTGGAAAGGTGGTGGTTGGCCATGCCGTACACAACGACTTCAAGGCTCTCAAGTACTCCCACCCCAAAGAACTCACCCGTGACACATCCAAAATCCCCTTGTTGAATCAAAAGGGTGGGTTCCCCGAGAATGTCGCCATCTCCCTGAAGCGCCTCGCCAAGGAACTGCTGCACAAAGATATCCAG
Seq C2 exon
GTTGGCAAAAGCGGACATTGTTCAGTGGAGGACGCCAGGACCACCATGGAGCTGTACAAGGTCGTGGAGGCAGAGTGGGAGCAACACTTGATGAAAGAACAACACTCTAAGCAGGAGTGACTGCCCCCACAGTCCATCCCAGACCTCATGGGTCACAGAGCGTTGAGCCAGTGGGAGGAAGAATAGGATGGAGCAGAGGCAGCAAGTGCTGTGGGGCACTCTAGCTCACTGGTAGTAGGGATAGTGGCATTACCAAGTTATGACTGTTCTTTCTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024167-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.015 C2=0.282
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=76.7)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=45.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATGACTCCTACGTGCG
R:
TTCTTCCTCCCACTGGCTCAA
Band lengths:
301-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]