MmuEX6071865 @ mm9
Exon Skipping
Gene
ENSMUSG00000048039 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:MGI Symbol;Acc:MGI:2140076]
Coordinates
chr3:87735253-87744608:+
Coord C1 exon
chr3:87735253-87736197
Coord A exon
chr3:87742496-87742696
Coord C2 exon
chr3:87743160-87744608
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCCTTATGTGCCCATTCTAGATC
3' ss Score
9.66
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
TGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGATTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCACCCAGAAGAAGGGCTCCAAGAAGAAGTCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGAAGCCCTTGAAGAAAAATGCTGTACCGAACTCCACCCAAGCTCGTTCTGAAGATAAGTGCCCTACAGTCCCCCAAAACTTGCCAGGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACAGGACCCAAGGGACGCGTTAGTTCCCTGGCTCGATGCAGCATTGTAAATTACAATGGTGATGTGCTGTACGATGAGTACGTCCTCCCCCCCTGCTACATCGTCAACTACCGGACCAGATGGAGTGGCATCCGGAAGTGCCACATGGTTAACGCTACACCCTTTAAGACTGCTCGGAGTCAG
Seq A exon
ATCTTGAAGATACTCTCAGGGAAGGTAGTGATAGGGCATGCCATTCACAATGACTACAAAGCCCTACAGTACTTTCATCCCAAGTCCCTCACCAGAGACACTTCCCGGATACCACTCCTCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTCCTGAGTCGGGACATCCAG
Seq C2 exon
GTTGGAAATACTGGACATTCCTCGGTGGAAGATGCCCAGGCCACAATGGAGCTGTACAAGTTGGTTGAAGTTGAATGGGAACAGCACCTGGCCCAGAATCCTCCAGAAAATTAGCAATCCCAGGGAGACACATGCAGTAGACCAACCCACAGTTCTTCCAGCTTCTCACCTGCAGAAGCTAGAATCACTGGGGAGAGGGGCTTGGCCAGAGGCTTAATACCCATTGAAATTTCATCTCAGCTATTTTGGTCACTGTGTGGTTAAGTGTCTCATGGAAGAGGAGAGCTTTCATGTTAAACCCACCTCTAGGTCAGGCAGGTGGCTCAGACCTGTAATCCCAGATACTTGGGAGGCTGAAACAGGTTATAGATGTAAAGTCTGCCTGGACTACAGAATTAATTCTAGGTCAGTGAGACCCTGTCCTAACATAAAAAGAGGGCCAGGGGTAAAGCCCAGCGCTAGAACACTTACCTAGCATGCATAAACCACTAGGTACAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048039-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=0.000 C2=0.270
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=26.1)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=47.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGTTCCCTGGCTCGATGC
R:
CATGTGTCTCCCTGGGATTGC
Band lengths:
299-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: