DreEX0039916 @ danRer10
Exon Skipping
Gene
ENSDARG00000102266 | isg20l2
Description
interferon stimulated exonuclease gene 20kDa-like 2 [Source:ZFIN;Acc:ZDB-GENE-070928-8]
Coordinates
chr16:29436226-29439743:-
Coord C1 exon
chr16:29439072-29439743
Coord A exon
chr16:29436871-29437071
Coord C2 exon
chr16:29436226-29436664
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATTATATGTTTTGCACACAGATT
3' ss Score
7.55
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAGGTTTGATAACTGAGAAACAAAATCAAAAGCAACCTGAAAAGATCCAACCGAAGAAGACGAAAAAAAAGCCCAGAAATGTCAGGTTCAACGTAGGAGAGCATTCAAAACCACGTGCGTTTTTTCCTAAATTTACCTCTTATCTGCCTAATAGCACCTATGAGCCTTCTAGTTCTGCACAAGCGTATTCCCGGACGTCCACATATTTATTTCCATCCCATGCCAACATATCTCAGAGGGATCTGACACAAAGAATGGCAGTTCCTCGCCCCCCTGGACCTATAAAATACTTGGCTCTGGACTGTGAGATGGTGGGAACAGGGCCGAAGGGGGCTCAGAGTGAACTGGCCCGCTGCAGTATTGTCTCCTATGATGGTGATGTGGTTTATGATAAATATGTCAAACCCATCAATCCAGTGACTGACTATCGCACTCGCTGGAGTGGAATCAGGAGGCAGGATCTACTCCACGCCACCCCTTTTTATCATGCGCAAAAAGAG
Seq A exon
ATTGTGAAGATAATAACAGGGAAGGTGGTTGTGGGACATGCTATCCATAATGACTTCAAGGCCCTAAAATATTTCCACCCCGCTTTCCAAACACGAGACACTTCGCGGATTCCACTGCTAAACGAGAAAGCTGGATTTCCTGAAAAACAATGTGTGTCTTTGAAGAAGCTCACCCAAGCTATCTTAAAGAGAGACATTCAG
Seq C2 exon
ACAGGGTATAGAGGCCACTCGTCAGTAGAAGATGCCAAAGCCACCATGGAACTGTACAAAGTGGTGGAGAGAATGTGGGAGCAGAAACTGGCATCTCTAAACCTTTCGGCTAAAGCAATGGATTTAGCTATGAAAAAGACAAGATAAGACTTTAAAAGATTTTCTTTTTTGCTTATACTTTTTTTTTGTCAGCTAAACTTCTCAACAACGTTTTGATTTAAGTACCGTTAAGGGATTTTTCTGTTTCTGTGAAACTGAGCTTAAGTTAATGGGGATAAATCAACCAATAATGTTTTACTCAGCCTTTGTGTTTATTAGTTGAACACACAAGAAGATATTTTGAGGAATGCTGTGAACTGATAGGCTAATTTATAGTCGATGGCTACTGGTTTCAAACATTCATAAATATGTTTTATCTGTGTTTAACAGAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102266_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=33.5)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=36.7)
Main Skipping Isoform:
ENSDART00000167132fB3332
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTGTGAGATGGTGGGA
R:
GAGATGCCAGTTTCTGCTCCC
Band lengths:
301-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]