HsaEX1017933 @ hg38
Exon Skipping
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20 like 2 [Source:HGNC Symbol;Acc:HGNC:25745]
Coordinates
chr1:156721891-156728441:-
Coord C1 exon
chr1:156727242-156728441
Coord A exon
chr1:156724148-156724348
Coord C2 exon
chr1:156721891-156723462
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCACACTTCTTCCAGATC
3' ss Score
9.75
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
CAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAAGATCAATAGCCACCCAACCCGCTCTCAG
Seq A exon
ATCTTGAAGATACTCACAGGGAAGATAGTGGTGGGGCATGCCATCCACAACGACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACCCGTGACACCTCCCATATCCCCCCCCTCAACCGGAAGGCTGACTGCCCGGAGAATGCCACCATGTCTCTGAAGCATCTCACCAAGAAGCTGCTAAACCGGGATATCCAG
Seq C2 exon
GTTGGGAAGAGCGGACATTCCTCTGTGGAAGATGCCCAGGCCACCATGGAGCTATATAAGTTGGTTGAAGTCGAGTGGGAAGAGCACCTAGCCCGGAATCCCCCTACAGACTAGTGGCAGTGGGGACGCTGGTGATATGAGGAGGCAGAGGCAGCACCCAGGAGAAACAGGGCAGTGGACCAATGGACAGCTCCACCAGCTCCACATCTTTGGAAGCTAGATTTGGGGAGAGAGAAGCTCTACCCCAGACTTAATACCCATTGAAATTTCACCTCAGGTGTTGTGTCCTGTGTCTGGTTAAGTGTCCCATGGAAGGGGAAAGCCTTCACGTCAGAACCCAACCCTATACCTTTTACTTCTTAAATGGTGCTAACCACAGGTGTCCCAGGGTGCTCTGTGCCAGTTAAGATTTTTAACTTTCAAGGGGCAGGGCATACTGGGAAATGTAGTTTCCCAAACTGCCTTATCACTTGGGTGGACATATGTCTCCTTTTATGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-'4-10,'4-7,11-10
Average complexity
S
Mappability confidence:
100%=90=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.149 C2=0.297
Domain overlap (PFAM):
C1:
NA
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=47.4)
Main Skipping Isoform:
ENST00000368219fB17735
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCTTGGTTGACCCCTG
R:
CATTGGTCCACTGCCCTGTTT
Band lengths:
307-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains