MmuEX6071865 @ mm10
Exon Skipping
Gene
ENSMUSG00000048039 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:MGI Symbol;Acc:MGI:2140076]
Coordinates
chr3:87931331-87940686:+
Coord C1 exon
chr3:87931331-87932275
Coord A exon
chr3:87938669-87938774
Coord C2 exon
chr3:87939238-87940686
Length
106 bp
Sequences
Splice sites
3' ss Seq
CATCCCAAGTCCCTCACCAGAGA
3' ss Score
0.87
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
TGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGATTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCACCCAGAAGAAGGGCTCCAAGAAGAAGTCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGAAGCCCTTGAAGAAAAATGCTGTACCGAACTCCACCCAAGCTCGTTCTGAAGATAAGTGCCCTACAGTCCCCCAAAACTTGCCAGGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACAGGACCCAAGGGACGCGTTAGTTCCCTGGCTCGATGCAGCATTGTAAATTACAATGGTGATGTGCTGTACGATGAGTACGTCCTCCCCCCCTGCTACATCGTCAACTACCGGACCAGATGGAGTGGCATCCGGAAGTGCCACATGGTTAACGCTACACCCTTTAAGACTGCTCGGAGTCAG
Seq A exon
AGACACTTCCCGGATACCACTCCTCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTCCTGAGTCGGGACATCCAG
Seq C2 exon
GTTGGAAATACTGGACATTCCTCGGTGGAAGATGCCCAGGCCACAATGGAGCTGTACAAGTTGGTTGAAGTTGAATGGGAACAGCACCTGGCCCAGAATCCTCCAGAAAATTAGCAATCCCAGGGAGACACATGCAGTAGACCAACCCACAGTTCTTCCAGCTTCTCACCTGCAGAAGCTAGAATCACTGGGGAGAGGGGCTTGGCCAGAGGCTTAATACCCATTGAAATTTCATCTCAGCTATTTTGGTCACTGTGTGGTTAAGTGTCTCATGGAAGAGGAGAGCTTTCATGTTAAACCCACCTCTAGGTCAGGCAGGTGGCTCAGACCTGTAATCCCAGATACTTGGGAGGCTGAAACAGGTTATAGATGTAAAGTCTGCCTGGACTACAGAATTAATTCTAGGTCAGTGAGACCCTGTCCTAACATAAAAAGAGGGCCAGGGGTAAAGCCCAGCGCTAGAACACTTACCTAGCATGCATAAACCACTAGGTACAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048039-'6-13,'6-12,7-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=0.000 C2=0.270
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=26.1)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACCGGACCAGATGGAGTG
R:
CTGCAGGTGAGAAGCTGGAAG
Band lengths:
252-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types