BtaEX6014343 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001518 | ISG20L2
Description
Bos taurus interferon stimulated exonuclease gene 20kDa-like 2 (ISG20L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046217]
Coordinates
chr3:14154780-14159242:+
Coord C1 exon
chr3:14154780-14155628
Coord A exon
chr3:14157448-14157648
Coord C2 exon
chr3:14158348-14159242
Length
201 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCATGTCTGTTTCAGATC
3' ss Score
11.78
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
AGAAGACAACAGCTGCCTCCAGCAGTGGGTCAGAGCAGTCCCTGGACAAGAAAGCTGCAGTGCCTTGGCTGACTCCTGCCCCTTCACAGAAGGCTGGTTCTGTTGTGGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGCGCCCTACCAAAGATTAAGAGCCACCCAACTCGCCCCCAGAAGAAGGGATCCCAGAAGAATCCTCCACCCAAGAATGGCCCACAGAACTCCACCCATACACATTCAGAGAATAAATACTCTGGGGTATCCCAGAAGATACCGGGGAAGATGGTGGCAATTGACTGTGAGATGGTGGGTACTGGACCCAAGGGGCATGTCAGTTCCTTGGCTCGATGTAGCATTGTCAACTACGACGGAGATGTGCTCTATGATGAGTACATCCTCCCCCCCTGCCACATTGTGGACTACCGGACCAGATGGAGTGGTATCCGGAAGCAGCACATGGTGAATGCTACACCCTTCAAGATTGCTCGGAACCAG
Seq A exon
ATCTTGAAGATTCTGGCCGGGAAGATAGTGGTGGGGCATGCCATCCACAACGACTTCAAAGCCCTTCAGTACATTCATCCCAAGTCCCTCACACGAGACACCTCTCATATCCCCCTCCTCAACCGTAAGGCTGACTGCCCAGAGAACGCCACCATGTCTCTGAAGAGTCTCACCAAGAAGCTGTTGAACCGGGACATCCAG
Seq C2 exon
GCTGGGAAAAGTGGACATTCCTCAGTGGAAGATGCTCAGGCCACCATGGAGCTGTACAAGTTGGTTGAAGTTGAATGGGAACAGCACCTGGCCCAGAATCCCCCTAAAGACTAGGGGTCACTGGCGATGCGGCAGGCGGAAGCAGCAACACAGCCAGGGCGGGGCAGTAGGCCATGGACAGCCCCACCAGCGCCGCACCTTGGAAGCCAGGGGTTCTGGGAGAGGGAGGCTGCACCCCAGGCTTAGCATCCATTGAAATTCACTTCAGGTGTTGTGTGTCTGGTTAACGTTACTTGGAAGGAGGACGCCTCCATGTCAGAACCCACCCCCGGGCCGTTTACCTCTTAAATGGTGCTAACCATGTGTCCCAAGGTGCTTTGCTTCTGGGAAAGTCTTTTGACTTTCAAAGGGCACGGCAAACTGGGAAATGTCTTTTCCCAAACTGCCTTATCGCTAGGGTGGCCATGTGTCTCATTATGCCTTTCCTCTCAAGCAATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001518-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.624 A=0.015 C2=0.378
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=PU(44.2=28.2)
A:
PF0092919=RNase_T=FE(42.3=100)
C2:
PF0092919=RNase_T=PD(11.5=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGCACATGGTGAATGC
R:
CAATGGATGCTAAGCCTGGGG
Band lengths:
304-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]