GgaEX6026218 @ galGal3
Exon Skipping
Gene
ENSGALG00000014632 | Q5ZJ82_CHICK
Description
NA
Coordinates
chr25:1647899-1648817:+
Coord C1 exon
chr25:1647899-1647992
Coord A exon
chr25:1648354-1648420
Coord C2 exon
chr25:1648701-1648817
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCCTCCCTCCCAGATG
3' ss Score
11.72
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
CGGAGTCGACAGAGCAGCAGAAGGGCCAAGAGTGTGGAGGACGACGACGAGGGGCATCTGATCTATCGCGTCGGCGACTGGCTACAAGAAAGAT
Seq A exon
ATGAGATTCTCAGCACTTTAGGGGAAGGCACGTTCGGCAGAGTGGTGCAGTGCATGGATCACCGGAG
Seq C2 exon
GGGTGGTGTTCGTGTTGCTCTCAAAATCATTAAAAATGTGGAGAAGTACAAGGAGGCTGCCCGGCTGGAGATCAACGTGCTGGAGAAAATCAACGAGAAGGATCCTGAGAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014632-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCGACAGAGCAGCAGAAG
R:
TCTCCAGCACGTTGATCTCCA
Band lengths:
178-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]