BtaEX6014596 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014393 | CLK2
Description
CDC-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr3:15426335-15427135:+
Coord C1 exon
chr3:15426335-15426422
Coord A exon
chr3:15426776-15426842
Coord C2 exon
chr3:15427019-15427135
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTTTTTTCATTTCAGATG
3' ss Score
11.78
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
Seq A exon
ATGAAATTGTAAGCACCTTGGGAGAGGGGACCTTCGGCCGAGTTGTACAGTGTGTTGACCATCGCAG
Seq C2 exon
GGGTGGGGCTCGGGTTGCCCTGAAGATCATTAAAAATGTGGAAAAGTACAAGGAAGCAGCTCGCCTAGAAATCAATGTGCTGGAGAAAATCAATGAGAAGGACCCTGACAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014393-'10-11,'10-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTAGAGGACGACGCTGA
R:
CTTGTTGTCAGGGTCCTTCTCA
Band lengths:
180-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]