DreEX6043276 @ danRer10
Exon Skipping
Gene
ENSDARG00000059870 | clk2b
Description
CDC-like kinase 2b [Source:ZFIN;Acc:ZDB-GENE-060929-1126]
Coordinates
chr16:54664306-54665362:-
Coord C1 exon
chr16:54665290-54665362
Coord A exon
chr16:54665139-54665205
Coord C2 exon
chr16:54664306-54664422
Length
67 bp
Sequences
Splice sites
3' ss Seq
CGCTTGTGTTTTCTGTGCAGACG
3' ss Score
9.4
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAAGCGTGGGCGGTTAAAGACGATGAGGAGGGTCATCTGATCTATCGGGCCGGTGATGTGCTGCAGGACAGAT
Seq A exon
ACGAGATCACACAGACGCTCGGAGAGGGAACCTTCGGGAAAGTGGTGGAGTGTGTGGATCATCAGAG
Seq C2 exon
GGGAGGCTCTCGCATCGCTCTAAAGATCATTAAGAATGTGGAGAAATATAAAGAAGCAGCCCGACTGGAGATCAACGTGCTGGAGAAGATCAACCAGAGAGATCCAGAAAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059870-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCGGTTAAAGACGATGA
R:
CTCTGGTTGATCTTCTCCAGCAC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]