MmuEX6072098 @ mm9
Exon Skipping
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:88973540-88974331:+
Coord C1 exon
chr3:88973540-88973624
Coord A exon
chr3:88973971-88974037
Coord C2 exon
chr3:88974215-88974331
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTACTTTCTTTCGTTTCAGATG
3' ss Score
12.1
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
Seq A exon
ATGAAATTGTAAGCACCTTAGGAGAAGGGACCTTCGGCCGAGTTGTGCAGTGTGTGGACCATCGCAG
Seq C2 exon
GGGCGGAACACAAGTTGCCCTGAAGATCATTAAGAATGTGGAGAAGTACAAGGAAGCAGCCCGACTAGAAATCAACGTGCTGGAGAAAATCAATGAGAAAGATCCTGACAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(25.0=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGAGCCAAGAGTGTAGA
R:
TGATTTTCTCCAGCACGTTGA
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: