DreEX0022143 @ danRer10
Exon Skipping
Gene
ENSDARG00000062954 | clk2a
Description
CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
Coordinates
chr19:9236583-9242186:+
Coord C1 exon
chr19:9236583-9236850
Coord A exon
chr19:9239681-9239747
Coord C2 exon
chr19:9242070-9242186
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTACTTGTCTATTAGATG
3' ss Score
7.16
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTACGACAACCGTTCTTCAGACCGCAGGCCATACGACAGACACTACGGCGAGAGCTACCGGCGCTTGGACCACAGCAGGGAACGGGACAGGGATCAAAACAGGGATCACCGGACGCCGAGCAACTACTACTCTCGCGACGCCTCGCCCAGCTACGACTTTCGCCGGGGACGCGACCGGGACCGCGAGGACTCATACCGGAGGAAAGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCGCATCCTCCTCG
Seq A exon
ATGAGATTGTCAGCACTTTGGGTGAGGGCACCTTCGGGAGGGTGATGCAATGTATTGATCATCGCAG
Seq C2 exon
GGGTGGAGCACATGTCGCTCTGAAGATCATCAAAAATGTGGAGAAGTACAAAGAGGCTGCCCGCCTGGAGATCAACGTACTGGAAAGAATCAACGAAAAGGATCCTGAGAATAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062954-'2-12,'2-10,6-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=0.108 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCGAGCAACTACTACTCT
R:
CTTCAGAGCGACATGTGCTCC
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]