RnoEX0021829 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188481869-188482760:+
Coord C1 exon
chr2:188481869-188481956
Coord A exon
chr2:188482305-188482371
Coord C2 exon
chr2:188482644-188482760
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTCTTTCGTTTCAGATG
3' ss Score
13.1
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CAGCACAGCAGCCGGAGAGCCAAGAGTGTAGAGGACGACGCTGAGGGCCACCTCATCTACCACGTCGGGGACTGGCTACAAGAGCGAT
Seq A exon
ATGAAATTGTAAGCACCTTAGGAGAAGGGACCTTTGGCCGAGTTGTACAGTGTGTGGACCATCGCAG
Seq C2 exon
GGGCGGAGCACGAGTTGCCCTGAAGATCATTAAGAATGTGGAGAAGTACAAGGAGGCCGCTCGACTAGAAATCAACGTGCTGGAGAAAATCAATGAGAAAGATCCTGACAACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'10-13,'10-11,12-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.1=0.0)
A:
PF0006920=Pkinase=PU(6.9=95.7)
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGAGCCAAGAGTGTAGA
R:
TGATTTTCTCCAGCACGTTGA
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]